Mat2dcorr - Relevant Publications: Difference between revisions
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[[File:GraphAbstr.gif|400px|thumb|mat2dcorr: Illustration of heterospectral 2D-COS (FTIR vs. Raman)]] | |||
Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.<br> <br> | Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.<br> <br> | ||
The 2D-COS analysis technique has been initially developed by [https://en.wikipedia.org/wiki/Isao_Noda Isao Noda] in the 1980s. | The 2D-COS analysis technique has been initially developed by [https://en.wikipedia.org/wiki/Isao_Noda Isao Noda] in the 1980s. | ||
Wikipedia link: [https://en.wikipedia.org/wiki/Two-dimensional_correlation_analysis Two-dimensional correlation analysis] | |||
__FORCETOC__ | __FORCETOC__ | ||
== Relevant Publications == | == Relevant Publications == | ||
| Line 27: | Line 24: | ||
== Publications in which the mat2dcorr toolbox has been used or mentioned == | == Publications in which the mat2dcorr toolbox has been used or mentioned == | ||
<br> | |||
<ol> | |||
<li>Sonoiki, D.S., K. Kwarkye, K.M. Sorensen, S.B. Engelsen, et al., <b>2024</b><br> | |||
<li> | [https://www.ncbi.nlm.nih.gov/pubmed/39686592 Single-Path Supercontinuum Near- to Mid-Infrared Correlation Spectroscopy of Aqueous Samples.] <br> | ||
[https:// | ''Applied Spectroscopy'', p. 37028241302352.</li> | ||
'' | |||
<li> | <li>Dabrowska, A., A. Schwaighofer, and B. Lendl. '''2024'''<br> | ||
[https:// | [https://www.ncbi.nlm.nih.gov/pubmed/38881172 Mid-Infrared Dispersion Spectroscopy as a Tool for Monitoring Time-Resolved Chemical Reactions on the Examples of Enzyme Kinetics and Mutarotation of Sugars]<br> | ||
'' | ''Applied Spectroscopy''. 37028241258109.</li> | ||
<li> | <li> Parpal, M., El Sachat, A., Sotomayor Torres, C.M., et al., '''2024'''<br> | ||
[https:// | [https://doi.org/10.1016/j.diamond.2023.110541 In situ Raman analysis of reduced-graphene oxide-based electroactive nanofluids.] <br> | ||
'' | ''Diamond and Related Materials'',. 141: p. 110541.</li> | ||
<li> | <li>Mite-Guzmán, N., M. Lazo, J. Triguero, A. Damián, et al., '''2023'''<br> | ||
[https://doi.org/10.1016/j. | [https://doi.org/10.1016/j.cscee.2023.100359 Two-dimensional infrared for monitoring the structural variations of UV-aged recycled polypropylene straps used in the Ecuadorian banana industry.] <br> | ||
'' | ''Case Studies in Chemical and Environmental Engineering'',. 7: p. 100359.</li> | ||
<li> | <li>Chavez-Angel, E., R.C. Ng, S. Sandell, J. He, et al.,'''2023'''<br> | ||
[https:// | [https://www.ncbi.nlm.nih.gov/pubmed/36771835 Application of Synchrotron Radiation-Based Fourier-Transform Infrared Microspectroscopy for Thermal Imaging of Polymer Thin Films.] <br> | ||
''Polymers (Basel)'', . 15(3).</li> | |||
</li> | |||
<li> | <li>Singh, R., V. Yadav, and S. Siddhanta,'''2023'''<br> | ||
[https:// | [https://www.ncbi.nlm.nih.gov/pubmed/36779479 Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy.] <br> | ||
'' | ''Phys Chem Chem Phys'', . 25(8): p. 6032-6043.</li> | ||
<li> | <li>Peng, S., F. Wang, D. Wei, C. Wang, et al.,'''2023'''<br> | ||
[https://doi.org/10. | [https://dx.doi.org/10.1016/j.jes.2023.10.004 Application of FTIR two-dimensional correlation spectroscopy (2D-COS) analysis in characterizing environmental behaviors of microplastics: A systematic review.] <br> | ||
'' | ''Journal of Environmental Sciences''</li> | ||
<li> | <li>Singh, R., Yadav, V., & Siddhanta, S. '''2023'''<br> | ||
[https://doi.org/10. | [https://doi.org/10.1039/D2CP05705K Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy].<br> | ||
'' | ''Physical Chemistry Chemical Physics'', 25(8), 6032-6043.</li> | ||
<li>Park, Y., Jin, S., Noda, I., & Jung, Y. M. '''2022'''<br> | <li>Park, Y., Jin, S., Noda, I., & Jung, Y. M. '''2022'''<br> | ||
| Line 66: | Line 63: | ||
''Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy'', 121750.</li> | ''Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy'', 121750.</li> | ||
<li> | <li>Chavez-Angel, E., Puertas, B., Kreuzer, M., Soliva Fortuny, R., Ng, R. C., Castro-Alvarez, A., & Sotomayor Torres, C. M. '''2022'''<br> | ||
[https://doi.org/10. | [https://doi.org/10.3390/foods11091304 Spectroscopic and thermal characterization of extra virgin olive oil adulterated with edible oils].<br> | ||
'' | ''Foods'', 11(9), 1304.</li> | ||
<li> | <li>Lan, Z., Zhang, Y., Chen, X., Li, S., Cao, H., Wang, S., & Meng, J. '''2022'''<br> | ||
[https:// | [https://doi.org/10.1007/s12161-022-02245-y Efficient Detection of Limonoid From Citrus Seeds by Handheld NIR: Compared with Benchtop NIR].<br> | ||
'' | ''Food Analytical Methods'', 15(7), 1909-1921.</li> | ||
<li> | <li>Amato, J., Iaccarino, N., D'Aria, F., D'Amico, F., Randazzo, A., Giancola, C., ... & Pagano, B. '''2022'''.<br> | ||
[https:// | [https://doi.org/10.1039/D2CP00058J Conformational plasticity of DNA secondary structures: Probing the conversion between i-motif and hairpin species by circular dichroism and ultraviolet resonance Raman spectroscopies].<br> | ||
'' | ''Physical Chemistry Chemical Physics'', 24(11), 7028-7044.</li> | ||
<li> | <li>Sun, Y., Wang, X., Xia, S., & Zhao, J. '''2021'''<br> | ||
[https:// | [https://doi.org/10.1016/j.cej.2021.129085 New insights into oxytetracycline (OTC) adsorption behavior on polylactic acid microplastics undergoing microbial adhesion and degradation]<br> | ||
'' | C''hemical Engineering Journal'', 416, 129085.<br> | ||
</li> | |||
<li> | <li>Park, Y., Jin, S., Noda, I., & Jung, Y. M. '''2020'''<br> | ||
[https://doi.org/10.1016/j. | [https://doi.org/10.1016/j.molstruc.2020.128405 Emerging developments in two-dimensional correlation spectroscopy (2D-COS)].<br> | ||
'' | ''Journal of Molecular Structure'', 1217, 128405.</li> | ||
<li> | <li>Pin, J. M., Anstey, A., Park, C. B., & Lee, P. C. '''2020'''<br> | ||
[https:// | [https://pubs.acs.org/doi/10.1021/acs.macromol.0c01819 Exploration of Polymer Calorimetric Glass Transition Phenomenology by Two-Dimensional Correlation Analysis].<br> | ||
'' | ''Macromolecules'', 54(1), 473-487.</li> | ||
<li>Lasch, P. and I. Noda '''2019''' <br> | |||
<li> | [https://doi.org/10.1177/0003702818819880 Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra].<br> | ||
[https:// | ''Appl Spectrosc''. 73(4): 359-379.</li> | ||
'' | |||
<li>Lasch, P. and I. Noda '''2017'''<br> | |||
[https://doi.org/10.1021/acs.analchem.7b00332 Two-Dimensional Correlation Spectroscopy for Multimodal Analysis of FT-IR, Raman, and MALDI-TOF MS Hyperspectral Images with Hamster Brain Tissue].<br> | |||
''Anal Chem''. 89(9): 5008-5016.</li> | |||
</ol> | </ol> | ||
== | == Acknowledgements == | ||
mat2dcorr is an open source software project which has been initiated and is maintained by [http://www.peter-lasch.de Peter Lasch] at the [ | mat2dcorr is an open source software project which has been initiated and is maintained by [http://www.peter-lasch.de Peter Lasch] at the [https://www.rki.de/EN/Institute/Organisation/Departments/ZBS/ZBS6/zbs6-proteomics-and-spectroscopy-node.html ''Proteomics and Spectroscopy''] unit at the [https://www.rki.de ''Robert Koch-Institute''] (Berlin/Germany). The Matlab-based mat2dcorr toolbox is distributed under the Creative Commons CC BY-NC-SA 4.0 license for non-commercial use. Please send references to any publications, presentations, or successful funding applications that make use of the mat2Dcorr toolbox ([mailto:lasch@peter-lasch.de e-mail]). | ||
In addition, I kindly ask to acknowledge utilization of the mat2dcorr toolbox by citing the following paper: <br> <br> | In addition, I kindly ask to acknowledge utilization of the mat2dcorr toolbox by citing the following paper: <br> <br> | ||
Latest revision as of 15:04, 9 April 2025
Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.
The 2D-COS analysis technique has been initially developed by Isao Noda in the 1980s.
Wikipedia link: Two-dimensional correlation analysis
Relevant Publications
Main concepts of two-dimensional correlation analysis
Basic principles of generalized 2D correlation spectroscopy are outlined in the following series of scientific publications:
- Noda, I..
Two-Dimensional Infrared (2D IR) Spectroscopy: Theory and Applications,
1990 Appl Spectrosc. 44(4): 550-561. - Noda, I.
Generalized Two-Dimensional Correlation Method Applicable to Infrared, Raman, and other Types of Spectroscopy,
1993 Appl Spectrosc. 47(9): 1329-1336. - Noda, I.
Determination of Two-Dimensional Correlation Spectra Using the Hilbert Transform,
2000 Appl Spectrosc. 54(7): 994-999.
Publications in which the mat2dcorr toolbox has been used or mentioned
- Sonoiki, D.S., K. Kwarkye, K.M. Sorensen, S.B. Engelsen, et al., 2024
Single-Path Supercontinuum Near- to Mid-Infrared Correlation Spectroscopy of Aqueous Samples.
Applied Spectroscopy, p. 37028241302352. - Dabrowska, A., A. Schwaighofer, and B. Lendl. 2024
Mid-Infrared Dispersion Spectroscopy as a Tool for Monitoring Time-Resolved Chemical Reactions on the Examples of Enzyme Kinetics and Mutarotation of Sugars
Applied Spectroscopy. 37028241258109. - Parpal, M., El Sachat, A., Sotomayor Torres, C.M., et al., 2024
In situ Raman analysis of reduced-graphene oxide-based electroactive nanofluids.
Diamond and Related Materials,. 141: p. 110541. - Mite-Guzmán, N., M. Lazo, J. Triguero, A. Damián, et al., 2023
Two-dimensional infrared for monitoring the structural variations of UV-aged recycled polypropylene straps used in the Ecuadorian banana industry.
Case Studies in Chemical and Environmental Engineering,. 7: p. 100359. - Chavez-Angel, E., R.C. Ng, S. Sandell, J. He, et al.,2023
Application of Synchrotron Radiation-Based Fourier-Transform Infrared Microspectroscopy for Thermal Imaging of Polymer Thin Films.
Polymers (Basel), . 15(3). - Singh, R., V. Yadav, and S. Siddhanta,2023
Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy.
Phys Chem Chem Phys, . 25(8): p. 6032-6043. - Peng, S., F. Wang, D. Wei, C. Wang, et al.,2023
Application of FTIR two-dimensional correlation spectroscopy (2D-COS) analysis in characterizing environmental behaviors of microplastics: A systematic review.
Journal of Environmental Sciences - Singh, R., Yadav, V., & Siddhanta, S. 2023
Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy.
Physical Chemistry Chemical Physics, 25(8), 6032-6043. - Park, Y., Jin, S., Noda, I., & Jung, Y. M. 2022
Continuing progress in the field of two-dimensional correlation spectroscopy (2D-COS), part II. Recent noteworthy developments.
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 121750. - Chavez-Angel, E., Puertas, B., Kreuzer, M., Soliva Fortuny, R., Ng, R. C., Castro-Alvarez, A., & Sotomayor Torres, C. M. 2022
Spectroscopic and thermal characterization of extra virgin olive oil adulterated with edible oils.
Foods, 11(9), 1304. - Lan, Z., Zhang, Y., Chen, X., Li, S., Cao, H., Wang, S., & Meng, J. 2022
Efficient Detection of Limonoid From Citrus Seeds by Handheld NIR: Compared with Benchtop NIR.
Food Analytical Methods, 15(7), 1909-1921. - Amato, J., Iaccarino, N., D'Aria, F., D'Amico, F., Randazzo, A., Giancola, C., ... & Pagano, B. 2022.
Conformational plasticity of DNA secondary structures: Probing the conversion between i-motif and hairpin species by circular dichroism and ultraviolet resonance Raman spectroscopies.
Physical Chemistry Chemical Physics, 24(11), 7028-7044. - Sun, Y., Wang, X., Xia, S., & Zhao, J. 2021
New insights into oxytetracycline (OTC) adsorption behavior on polylactic acid microplastics undergoing microbial adhesion and degradation
Chemical Engineering Journal, 416, 129085.
- Park, Y., Jin, S., Noda, I., & Jung, Y. M. 2020
Emerging developments in two-dimensional correlation spectroscopy (2D-COS).
Journal of Molecular Structure, 1217, 128405. - Pin, J. M., Anstey, A., Park, C. B., & Lee, P. C. 2020
Exploration of Polymer Calorimetric Glass Transition Phenomenology by Two-Dimensional Correlation Analysis.
Macromolecules, 54(1), 473-487. - Lasch, P. and I. Noda 2019
Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra.
Appl Spectrosc. 73(4): 359-379. - Lasch, P. and I. Noda 2017
Two-Dimensional Correlation Spectroscopy for Multimodal Analysis of FT-IR, Raman, and MALDI-TOF MS Hyperspectral Images with Hamster Brain Tissue.
Anal Chem. 89(9): 5008-5016.
Acknowledgements
mat2dcorr is an open source software project which has been initiated and is maintained by Peter Lasch at the Proteomics and Spectroscopy unit at the Robert Koch-Institute (Berlin/Germany). The Matlab-based mat2dcorr toolbox is distributed under the Creative Commons CC BY-NC-SA 4.0 license for non-commercial use. Please send references to any publications, presentations, or successful funding applications that make use of the mat2Dcorr toolbox (e-mail).
In addition, I kindly ask to acknowledge utilization of the mat2dcorr toolbox by citing the following paper:
| Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra. Lasch, P. and Noda, I. Appl Spectrosc. 2019. 73(4): 359-379. doi:10.1177/0003702818819880 |
Bug reports are welcome! (e-mail)