Mat2dcorr - Relevant Publications: Difference between revisions
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[[File:GraphAbstr.gif|400px|thumb|mat2dcorr: Illustration of heterospectral 2D-COS (FTIR vs. Raman)]] | |||
Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.<br> <br> | Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.<br> <br> | ||
The 2D-COS analysis technique has been initially developed by [https://en.wikipedia.org/wiki/Isao_Noda Isao Noda] in the 1980s. | The 2D-COS analysis technique has been initially developed by [https://en.wikipedia.org/wiki/Isao_Noda Isao Noda] in the 1980s. | ||
Wikipedia link: [https://en.wikipedia.org/wiki/Two-dimensional_correlation_analysis Two-dimensional correlation analysis] | |||
__FORCETOC__ | |||
== Acknowledgements == | |||
mat2dcorr is an open source software project which has been initiated and is maintained by [http://www.peter-lasch.de Peter Lasch] at the [https://www.rki.de/EN/Institute/Organisation/Departments/ZBS/ZBS6/zbs6-proteomics-and-spectroscopy-node.html ''Proteomics and Spectroscopy''] unit at the [https://www.rki.de ''Robert Koch-Institute''] (Berlin/Germany). The Matlab-based mat2dcorr toolbox is distributed under the Creative Commons CC BY-NC-SA 4.0 license for non-commercial use. Please send references to any publications, presentations, or successful funding applications that make use of the mat2Dcorr toolbox ([mailto:lasch@peter-lasch.de e-mail]). | |||
In addition, I kindly ask to acknowledge utilization of the mat2dcorr toolbox by citing the following paper: <br> <br> | |||
<ul><ul> | <ul><ul> | ||
{| class="wikitable" width=800 | {| class="wikitable" width=800 | ||
|- | |- | ||
| | | [http://doi.org/10.1177/0003702818819880 Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra]. Lasch, P. and Noda, I. ''Appl Spectrosc''. '''2019'''. 73(4): 359-379. doi:10.1177/0003702818819880 | ||
|} | |} | ||
<br> | <br> | ||
</ul></ul> | </ul></ul> | ||
Bug reports are welcome! ([mailto:lasch@peter-lasch.de e-mail]) | |||
== Relevant Publications == | == Relevant Publications == | ||
| Line 26: | Line 39: | ||
</ul> | </ul> | ||
== Publications in which the mat2dcorr toolbox has been used or mentioned == | |||
<br> | |||
<ol start="20" reversed="reversed"> | |||
<li>Mirveis, Z., Patil, N., Byrne, H. J. '''2026''' <br> | |||
[https://www.ncbi.nlm.nih.gov/pubmed/41376466 Elucidating Time-Resolved Intracellular Metabolic Dynamics Via Label-Free Raman Microspectroscopy and 2D Correlation Spectroscopy.]<br> | |||
''Analyst''. 151(2): 577–588.</li> | |||
<li>Rico, J.J., Dernbecher, A., de la Rosa, J.M., Hilfert, L., Almuina-Villar, H., Kulak, N, Lucia, S., Dieguez-Alonso, A. '''2025'''<br> | |||
[https://dx.doi.org/10.1016/j.jaap.2025.107201 Investigation on the impact of potassium and mild transport limitations on the pyrolysis behavior of beech wood and its macrocomponents].<br> | |||
Journal of Analytical and Applied Pyrolysis 192: 107201.</li> | |||
<li>Wilbert, D., Voigt, M., Jaeger, M. '''2025''' <br> | |||
[https://www.ncbi.nlm.nih.gov/pubmed/40478288 A Process Analyzer Assembly for Real-Time Automated Near-Infrared, Raman, and Proton Nuclear Magnetic Resonance Spectroscopic Monitoring Enhanced by Heterocovariance Spectroscopy and Chemometry Applied to a Schiff Base Formation.] <br> | |||
''Analytical and Bioanalytical Chemistry''. 417(25): 5703–5713.</li> | |||
<li>Sonoiki, D. S., '''2025'''<br> | |||
[https://orbit.dtu.dk/en/publications/supercontinuum-laser-spectroscopy/ Supercontinuum Laser Spectroscopy.] <br> | |||
''Technical University of Denmark'', PhD Thesis: 134.</li> | |||
<li>Sonoiki, D.S., K. Kwarkye, K.M. Sorensen, S.B. Engelsen, et al.,'''2024'''<br> | |||
[https://www.ncbi.nlm.nih.gov/pubmed/39686592 Single-Path Supercontinuum Near- to Mid-Infrared Correlation Spectroscopy of Aqueous Samples.] <br> | |||
''Applied Spectroscopy'', p. 37028241302352.</li> | |||
<li>Dabrowska, A., A. Schwaighofer, and B. Lendl. '''2024'''<br> | |||
[https://www.ncbi.nlm.nih.gov/pubmed/38881172 Mid-Infrared Dispersion Spectroscopy as a Tool for Monitoring Time-Resolved Chemical Reactions on the Examples of Enzyme Kinetics and Mutarotation of Sugars]<br> | |||
''Applied Spectroscopy''. 37028241258109.</li> | |||
<li> | |||
[https:// | |||
'' | |||
<li> Parpal, M., El Sachat, A., Sotomayor Torres, C.M., et al., '''2024'''<br> | |||
[https://doi.org/10.1016/j.diamond.2023.110541 In situ Raman analysis of reduced-graphene oxide-based electroactive nanofluids.] <br> | |||
''Diamond and Related Materials'',. 141: p. 110541.</li> | |||
<li> | <li>Mite-Guzmán, N., M. Lazo, J. Triguero, A. Damián, et al., '''2023'''<br> | ||
[https://doi.org/10.1016/j.cscee.2023.100359 Two-dimensional infrared for monitoring the structural variations of UV-aged recycled polypropylene straps used in the Ecuadorian banana industry.] <br> | |||
''Case Studies in Chemical and Environmental Engineering'',. 7: p. 100359.</li> | |||
<li> | <li>Chavez-Angel, E., R.C. Ng, S. Sandell, J. He, et al., '''2023'''<br> | ||
[https://www.ncbi.nlm.nih.gov/pubmed/36771835 Application of Synchrotron Radiation-Based Fourier-Transform Infrared Microspectroscopy for Thermal Imaging of Polymer Thin Films.] <br> | |||
''Polymers (Basel)'', . 15(3).</li> | |||
<li> | <li>Peng, S., F. Wang, D. Wei, C. Wang, et al., '''2023'''<br> | ||
[https://dx.doi.org/10.1016/j.jes.2023.10.004 Application of FTIR two-dimensional correlation spectroscopy (2D-COS) analysis in characterizing environmental behaviors of microplastics: A systematic review.] <br> | |||
''Journal of Environmental Sciences''</li> | |||
<li> | <li>Singh, R., Yadav, V., & Siddhanta, S. '''2023'''<br> | ||
[https://doi.org/10.1039/D2CP05705K Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy].<br> | |||
''Physical Chemistry Chemical Physics'', 25(8), 6032-6043.</li> | |||
<li> | <li>Park, Y., Jin, S., Noda, I., & Jung, Y. M. '''2022'''<br> | ||
[https://doi.org/10.1016/j.saa.2022.121750 Continuing progress in the field of two-dimensional correlation spectroscopy (2D-COS), part II. Recent noteworthy developments].<br> | |||
''Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy'', 121750.</li> | |||
<li>Chavez-Angel, E., Puertas, B., Kreuzer, M., Soliva Fortuny, R., Ng, R. C., Castro-Alvarez, A., & Sotomayor Torres, C. M. | <li>Chavez-Angel, E., Puertas, B., Kreuzer, M., Soliva Fortuny, R., Ng, R. C., Castro-Alvarez, A., & Sotomayor Torres, C. M. '''2022'''<br> | ||
[https://doi.org/10.3390/foods11091304 Spectroscopic and thermal characterization of extra virgin olive oil adulterated with edible oils].<br> | |||
''Foods'', 11(9), 1304.</li> | |||
<li> | <li>Lan, Z., Zhang, Y., Chen, X., Li, S., Cao, H., Wang, S., & Meng, J. '''2022'''<br> | ||
[https://doi.org/10.1007/s12161-022-02245-y Efficient Detection of Limonoid From Citrus Seeds by Handheld NIR: Compared with Benchtop NIR].<br> | |||
''Food Analytical Methods'', 15(7), 1909-1921.</li> | |||
<li> | <li>Amato, J., Iaccarino, N., D'Aria, F., D'Amico, F., Randazzo, A., Giancola, C., ... & Pagano, B. '''2022'''.<br> | ||
[https://doi.org/10.1039/D2CP00058J Conformational plasticity of DNA secondary structures: Probing the conversion between i-motif and hairpin species by circular dichroism and ultraviolet resonance Raman spectroscopies].<br> | |||
''Physical Chemistry Chemical Physics'', 24(11), 7028-7044.</li> | |||
</ | <li>Sun, Y., Wang, X., Xia, S., & Zhao, J. '''2021'''<br> | ||
[https://doi.org/10.1016/j.cej.2021.129085 New insights into oxytetracycline (OTC) adsorption behavior on polylactic acid microplastics undergoing microbial adhesion and degradation]<br> | |||
C''hemical Engineering Journal'', 416, 129085.<br> | |||
</li> | |||
<li>Park, Y., Jin, S., Noda, I., & Jung, Y. M. '''2020'''<br> | |||
[https://doi.org/10.1016/j.molstruc.2020.128405 Emerging developments in two-dimensional correlation spectroscopy (2D-COS)].<br> | |||
''Journal of Molecular Structure'', 1217, 128405.</li> | |||
<li>Pin, J. M., Anstey, A., Park, C. B., & Lee, P. C. '''2020'''<br> | |||
[https://pubs.acs.org/doi/10.1021/acs.macromol.0c01819 Exploration of Polymer Calorimetric Glass Transition Phenomenology by Two-Dimensional Correlation Analysis].<br> | |||
''Macromolecules'', 54(1), 473-487.</li> | |||
<li>Lasch, P. and I. Noda. '''2019''' <br> | |||
[https://doi.org/10.1177/0003702818819880 Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra].<br> | |||
''Appl Spectrosc''. 73(4): 359-379.</li> | |||
< | <li>Lasch, P. and I. Noda. '''2017'''<br> | ||
[https://doi.org/10.1021/acs.analchem.7b00332 Two-Dimensional Correlation Spectroscopy for Multimodal Analysis of FT-IR, Raman, and MALDI-TOF MS Hyperspectral Images with Hamster Brain Tissue].<br> | |||
''Anal Chem''. 89(9): 5008-5016.</li> | |||
</ol> | |||
</ | |||
Latest revision as of 10:34, 10 June 2026
Two-dimensional correlation spectroscopy (2D-COS), or two-dimensional correlation analysis is known as a set of mathematical techniques useful to study changes in dynamic spectra. Dynamic spectra are often represented by spectra series obtained from a sample that was subjected to an external perturbation.
The 2D-COS analysis technique has been initially developed by Isao Noda in the 1980s.
Wikipedia link: Two-dimensional correlation analysis
Acknowledgements
mat2dcorr is an open source software project which has been initiated and is maintained by Peter Lasch at the Proteomics and Spectroscopy unit at the Robert Koch-Institute (Berlin/Germany). The Matlab-based mat2dcorr toolbox is distributed under the Creative Commons CC BY-NC-SA 4.0 license for non-commercial use. Please send references to any publications, presentations, or successful funding applications that make use of the mat2Dcorr toolbox (e-mail).
In addition, I kindly ask to acknowledge utilization of the mat2dcorr toolbox by citing the following paper:
| Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra. Lasch, P. and Noda, I. Appl Spectrosc. 2019. 73(4): 359-379. doi:10.1177/0003702818819880 |
Bug reports are welcome! (e-mail)
Relevant Publications
Main concepts of two-dimensional correlation analysis
Basic principles of generalized 2D correlation spectroscopy are outlined in the following series of scientific publications:
- Noda, I..
Two-Dimensional Infrared (2D IR) Spectroscopy: Theory and Applications,
1990 Appl Spectrosc. 44(4): 550-561. - Noda, I.
Generalized Two-Dimensional Correlation Method Applicable to Infrared, Raman, and other Types of Spectroscopy,
1993 Appl Spectrosc. 47(9): 1329-1336. - Noda, I.
Determination of Two-Dimensional Correlation Spectra Using the Hilbert Transform,
2000 Appl Spectrosc. 54(7): 994-999.
Publications in which the mat2dcorr toolbox has been used or mentioned
- Mirveis, Z., Patil, N., Byrne, H. J. 2026
Elucidating Time-Resolved Intracellular Metabolic Dynamics Via Label-Free Raman Microspectroscopy and 2D Correlation Spectroscopy.
Analyst. 151(2): 577–588. - Rico, J.J., Dernbecher, A., de la Rosa, J.M., Hilfert, L., Almuina-Villar, H., Kulak, N, Lucia, S., Dieguez-Alonso, A. 2025
Investigation on the impact of potassium and mild transport limitations on the pyrolysis behavior of beech wood and its macrocomponents.
Journal of Analytical and Applied Pyrolysis 192: 107201. - Wilbert, D., Voigt, M., Jaeger, M. 2025
A Process Analyzer Assembly for Real-Time Automated Near-Infrared, Raman, and Proton Nuclear Magnetic Resonance Spectroscopic Monitoring Enhanced by Heterocovariance Spectroscopy and Chemometry Applied to a Schiff Base Formation.
Analytical and Bioanalytical Chemistry. 417(25): 5703–5713. - Sonoiki, D. S., 2025
Supercontinuum Laser Spectroscopy.
Technical University of Denmark, PhD Thesis: 134. - Sonoiki, D.S., K. Kwarkye, K.M. Sorensen, S.B. Engelsen, et al.,2024
Single-Path Supercontinuum Near- to Mid-Infrared Correlation Spectroscopy of Aqueous Samples.
Applied Spectroscopy, p. 37028241302352. - Dabrowska, A., A. Schwaighofer, and B. Lendl. 2024
Mid-Infrared Dispersion Spectroscopy as a Tool for Monitoring Time-Resolved Chemical Reactions on the Examples of Enzyme Kinetics and Mutarotation of Sugars
Applied Spectroscopy. 37028241258109. - Parpal, M., El Sachat, A., Sotomayor Torres, C.M., et al., 2024
In situ Raman analysis of reduced-graphene oxide-based electroactive nanofluids.
Diamond and Related Materials,. 141: p. 110541. - Mite-Guzmán, N., M. Lazo, J. Triguero, A. Damián, et al., 2023
Two-dimensional infrared for monitoring the structural variations of UV-aged recycled polypropylene straps used in the Ecuadorian banana industry.
Case Studies in Chemical and Environmental Engineering,. 7: p. 100359. - Chavez-Angel, E., R.C. Ng, S. Sandell, J. He, et al., 2023
Application of Synchrotron Radiation-Based Fourier-Transform Infrared Microspectroscopy for Thermal Imaging of Polymer Thin Films.
Polymers (Basel), . 15(3). - Peng, S., F. Wang, D. Wei, C. Wang, et al., 2023
Application of FTIR two-dimensional correlation spectroscopy (2D-COS) analysis in characterizing environmental behaviors of microplastics: A systematic review.
Journal of Environmental Sciences - Singh, R., Yadav, V., & Siddhanta, S. 2023
Probing plasmon-induced surface reactions using two-dimensional correlation vibrational spectroscopy.
Physical Chemistry Chemical Physics, 25(8), 6032-6043. - Park, Y., Jin, S., Noda, I., & Jung, Y. M. 2022
Continuing progress in the field of two-dimensional correlation spectroscopy (2D-COS), part II. Recent noteworthy developments.
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 121750. - Chavez-Angel, E., Puertas, B., Kreuzer, M., Soliva Fortuny, R., Ng, R. C., Castro-Alvarez, A., & Sotomayor Torres, C. M. 2022
Spectroscopic and thermal characterization of extra virgin olive oil adulterated with edible oils.
Foods, 11(9), 1304. - Lan, Z., Zhang, Y., Chen, X., Li, S., Cao, H., Wang, S., & Meng, J. 2022
Efficient Detection of Limonoid From Citrus Seeds by Handheld NIR: Compared with Benchtop NIR.
Food Analytical Methods, 15(7), 1909-1921. - Amato, J., Iaccarino, N., D'Aria, F., D'Amico, F., Randazzo, A., Giancola, C., ... & Pagano, B. 2022.
Conformational plasticity of DNA secondary structures: Probing the conversion between i-motif and hairpin species by circular dichroism and ultraviolet resonance Raman spectroscopies.
Physical Chemistry Chemical Physics, 24(11), 7028-7044. - Sun, Y., Wang, X., Xia, S., & Zhao, J. 2021
New insights into oxytetracycline (OTC) adsorption behavior on polylactic acid microplastics undergoing microbial adhesion and degradation
Chemical Engineering Journal, 416, 129085.
- Park, Y., Jin, S., Noda, I., & Jung, Y. M. 2020
Emerging developments in two-dimensional correlation spectroscopy (2D-COS).
Journal of Molecular Structure, 1217, 128405. - Pin, J. M., Anstey, A., Park, C. B., & Lee, P. C. 2020
Exploration of Polymer Calorimetric Glass Transition Phenomenology by Two-Dimensional Correlation Analysis.
Macromolecules, 54(1), 473-487. - Lasch, P. and I. Noda. 2019
Two-Dimensional Correlation Spectroscopy (2D-COS) for Analysis of Spatially Resolved Vibrational Spectra.
Appl Spectrosc. 73(4): 359-379. - Lasch, P. and I. Noda. 2017
Two-Dimensional Correlation Spectroscopy for Multimodal Analysis of FT-IR, Raman, and MALDI-TOF MS Hyperspectral Images with Hamster Brain Tissue.
Anal Chem. 89(9): 5008-5016.